PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018785-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 92aa    MW: 10839.7 Da    PI: 10.817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018785-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+e d ll + ++++G g W +++ + g++R++k+c++rw++yl
    NNU_018785-RA 19 KGKWTEEKDILLRKFIERYGEGKWCKVPLRAGLNRCRKSCRLRWLNYL 66
                     79*********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.5131470IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-201669IPR009057Homeodomain-like
SMARTSM007171.8E-111868IPR001005SANT/Myb domain
PfamPF002498.1E-141966IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-202092IPR009057Homeodomain-like
CDDcd001671.78E-92166No hitNo description
Gene3DG3DSA:1.10.10.603.3E-67092IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MQSKTRSSEV MDGGLGLRKG KWTEEKDILL RKFIERYGEG KWCKVPLRAG LNRCRKSCRL  60
RWLNYLRPGI KRGEFTSDEV DLIIRFHKLL GN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274761.16e-50PREDICTED: myb-related protein 330-like
SwissprotQ9FNV98e-39MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059BUP61e-40A0A059BUP6_EUCGR; Uncharacterized protein
TrEMBLF6HSK42e-40F6HSK4_VITVI; Putative uncharacterized protein
STRINGVIT_14s0006g01280.t015e-40(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-40myb domain protein 113